Oct 29, 2020 | 3116 views
VNC with Default desktop [Recommended]
Refer to:
## install vncserver
yum install tigervnc-server xorg-x11-fonts-Type1
## copy vnc systemc config file, :3 is an example, other number can be used
cp /lib/systemd/system/[email protected] /etc/systemd/system/vncserver@:3.service
## replace with a user name
grep USER /lib/systemd/system/[email protected]
# 2. Replace with the actual user name and edit vncserver
ExecStart=/usr/bin/vncserver_wrapper %i
## change into
# su -
## run below command to set user's vnc password
$ vncserver
VNC with XFCE
Refer to
Beware xstartup file requires to unset variables SESSION_MANAGER and DBUS_SESSION_BUS_ADDRESS as below describles.
--------- Install necessary packages in root ------
881 yum -y install epel-release
883 yum groupinstall "Xfce" -y
884 yum -y install tigervnc-server tigervnc-server-minimal
885 history
--------- login to normal user ------------
# su - user
1 ls
## set password
2 vncserver
3 cd ~/.vnc/
4 vncserver -list
cp /etc/X11/Xresources ~/.Xresources
5 cp xstartup{,.bak}
## EDIT xstartup as below
7 cat xstartup
#!/bin/bash
unset SESSION_MANAGER
unset DBUS_SESSION_BUS_ADDRESS
xrdb $HOME/.Xresources
startxfce4 &
For Ubuntu 16.04: How to Install and Configure VNC on Ubuntu 16.04
For Ubuntu 18.04: How to Install and Configure VNC on Ubuntu 18.04
Comments: 0
Oct 28, 2020 | 2503 views
How to Install CUDA 11.1 + Pytorch 1.7
=================================================
Install CUDA 11.1
=================================================
下载：https://developer.download.nvidia.com/compute/cuda/11.1.0/local_installers/cuda-repo-rhel7-11-1-local-11.1.0_455.23.05-1.x86_64.rpm
文档：https://docs.nvidia.com/cuda/cuda-installation-guide-linux/index.html
===== Step One:
Pre-installation Actions [https://docs.nvidia.com/cuda/cuda-installation-guide-linux/index.html#pre-installation-actions]
!!! Important:
You may need to update kernel if ` yum install kernel-devel-$(uname -r) kernel-headers-$(uname -r)` fails.
How to update kernel: `yum install kernel kernel-tools kernel-tools-libs` [https://www.golinuxcloud.com/how-to-update-kernel-rhel-centos-7-yum-linux/]
===== Step Two:
Package Manager Installation [https://docs.nvidia.com/cuda/cuda-installation-guide-linux/index.html#package-manager-installation]
===== Step Three:
Post-installation Actions [https://docs.nvidia.com/cuda/cuda-installation-guide-linux/index.html#post-installation-actions]
===== Step Four: Install proper drivers for Graphic cards
[ https://www.server-world.info/en/note?os=CentOS_7&p=nvidia]
===== Step Five: Compile samples
# cuda-install-samples-11.1.sh [dir]
# make -k -j
检查命令
nvidia-smi
lspci | grep -i nvi
./bin/x86_64/linux/release/deviceQuery
当中可能遇到的错误情况处理：
1. centos7 yum 错误 This system is not registered with an entitlement server [https://blog.csdn.net/whatday/article/details/106106767]
2. cudaNvSci.h: fatal error: nvscibuf.h: No such file or directory [https://cloud.tencent.com/developer/article/1584631]
其他参考：
1. https://www.server-world.info/en/note?os=CentOS_7&p=cuda&f=4 (samples的测试)
2. https://docs.nvidia.com/cuda/cuda-installation-guide-linux/index.html#abstract (Official installation guide)
=================================================
Install Pytorch 1.7
=================================================
https://pytorch.org/get-started/locally/
Recommend using conda to install Pytorch, refer to above link:
conda install pytorch torchvision torchaudio cudatoolkit=11.0 -c pytorch
For pip, run this Command: pip install torch==1.7.0+cu110 torchvision==0.8.1+cu110 torchaudio===0.7.0 -f https://download.pytorch.org/whl/torch_stable.html
Test code after successful installation from [https://varhowto.com/install-pytorch-cuda-10-2/]
How to install CUDA 10.2 + Pytorch 1.6 on CentOS 7
=================================================
Install CUDA 10.2
=================================================
Download：https://developer.nvidia.com/cuda-10.2-download-archive?target_os=Linux&target_arch=x86_64&target_distro=CentOS&target_version=7&target_type=rpmnetwork
Document：https://docs.nvidia.com/cuda/archive/10.2/cuda-installation-guide-linux/index.html
===== Step One:
Pre-installation Actions [https://docs.nvidia.com/cuda/archive/10.2/cuda-installation-guide-linux/index.html#pre-installation-actions]
!!! Important:
You may need to update kernel if ` yum install kernel-devel-$(uname -r) kernel-headers-$(uname -r)` fails.
How to update kernel: `yum install kernel kernel-tools kernel-tools-libs` [https://www.golinuxcloud.com/how-to-update-kernel-rhel-centos-7-yum-linux/]
===== Step Two:
Package Manager Installation [https://docs.nvidia.com/cuda/archive/10.2/cuda-installation-guide-linux/index.html#package-manager-installation]
===== Step Three:
Post-installation Actions [https://docs.nvidia.com/cuda/archive/10.2/cuda-installation-guide-linux/index.html#post-installation-actions]
===== Step Four: Install proper drivers for Graphic cards
[ https://www.server-world.info/en/note?os=CentOS_7&p=nvidia]
===== Step Five: Compile samples
# cuda-install-samples-10.2.sh [directory]
# make -k -j
当中可能遇到的错误情况处理：
1. centos7 yum 错误 This system is not registered with an entitlement server [https://blog.csdn.net/whatday/article/details/106106767]
2. cudaNvSci.h: fatal error: nvscibuf.h: No such file or directory [https://cloud.tencent.com/developer/article/1584631]
其他参考：
1. https://www.server-world.info/en/note?os=CentOS_7&p=cuda&f=4 (samples的测试)
2. https://docs.nvidia.com/cuda/archive/10.2/cuda-installation-guide-linux/index.html#post-installation-actions (Official installation guide)
=================================================
Install Pytorch 1.6
=================================================
-------First: Install Python-3.8.1 (Follow from source guide [https://phoenixnap.com/kb/how-to-install-python-3-centos-7] )---------
How to Install PyTorch with CUDA 10.2: https://varhowto.com/install-pytorch-cuda-10-2/
Comments: 0
Oct 22, 2020 | 1509 views
!!! Recommend: You can also compile the latest Octopus with gcc version 8 with the same procedure.
================= 如何编译安装Octopus 9.1 =====================
说明!!!：using mpif90 as FC compiler when compiling blas, lapack, libxc libraries
According to "Normally it is necessary to compile all Fortran libraries with the same compiler. If you have trouble, try to look for help in the Octopus mailing list." [Testing_your_build]
参考资料：
1. Octopus安装-算盘
2. 安装 Octopus
3. wiki Manual:Building_from_scratch
4. wiki Manual:Installation#Testing_your_build
5. https://octopus-code.org/wiki/Manual:Installation
软件安装到/opt/目录下，如下
[root@mgt lapack-3.9.0]# ls -F /opt/ | more
BLAS-3.8.0/
fftw-3.3.8/
gsl-2.4/
HOW-Octopus-9.1-Was-Installed.txt
lapack-3.9.0/
libxc-4.3.4/
octopus-9.1/
openmpi-4.0.5/
安装一些必须的工具包：
---------------------
yum install -y autoconf automake libtool
--------------------
环境变量被更改到/etc/profile
--------------------
export LD_LIBRARY_PATH=/opt/gsl-2.4/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/opt/openmpi-4.0.5/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/opt/libxc-4.3.4//lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/opt/fftw-3.3.8//lib:$LD_LIBRARY_PATH
export PATH=/opt/gsl-2.4/bin:$PATH
export PATH=/opt/openmpi-4.0.5/bin:$PATH
export PATH=/opt/octopus-9.1/bin:$PATH
export PATH=/opt/libxc-4.3.4//bin:$PATH
export PATH=/opt/fftw-3.3.8//bin:$PATH
=== 1. 编译安装openmpi-4.0.5 =======
Tutorial refer to https://www.jianshu.com/p/7309d3b1c735
Reference:
- openmpi building#easy-build
wget https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.5.tar.bz2
./configure --prefix=/opt/openmpi-4.0.5
make -j
make -j install
cd examples/
make
./hello_c
echo 'export LD_LIBRARY_PATH=/opt/openmpi-4.0.5/lib:$LD_LIBRARY_PATH' >> /etc/profile
echo 'export PATH=/opt/openmpi-4.0.5/bin:$PATH' >> /etc/profile
=== 2. 编译安装 BLAS-3.8.0/ ===
[root@mgt BLAS-3.8.0]# grep -v '^#' make.inc
SHELL = /bin/sh
PLAT = _LINUX
FORTRAN = mpif90
OPTS = -O3
DRVOPTS = $(OPTS)
NOOPT =
LOADER = mpif90
LOADOPTS =
ARCH = ar
ARCHFLAGS= cr
RANLIB = ranlib
BLASLIB = blas$(PLAT).a
mkdir -pv /opt/BLAS-3.8.0/
cp blas_LINUX.a /opt/BLAS-3.8.0/libblas.a
=== 3. 编译安装 lapack-3.9.0 ===
mv make.inc.example make.inc
### EDIT make.inc like below
[root@mgt lapack-3.9.0]# grep FC make.inc
# Modify the FC and FFLAGS definitions to the desired compiler
FC = mpif90
make -j
cd ..
tar cvf - lapack-3.9.0/*.a | tar xvf - -C /opt/
=== 可选但此教程有安装：编译安装 scalapack-2.1.0 ======
Tutorial can refer to 安装scalapack
wget https://github.com/Reference-ScaLAPACK/scalapack/archive/v2.1.0.tar.gz
[root@mgt scalapack-2.1.0]# grep -v '^#' SLmake.inc | grep -E 'BLAS|LAPACK'
SCALAPACKLIB = libscalapack.a
BLASLIB = /opt/BLAS-3.8.0/blas_LINUX.a
LAPACKLIB = /opt/lapack-3.9.0/liblapack.a
LIBS = $(LAPACKLIB) $(BLASLIB)
make -j
cd ..
tar cvf - scalapack-2.1.0 | tar xvf - -C /opt/
=== 4. 编译安装 libxc-4.3.4 ===
[root@mgt libxc-4.3.4]#
autoreconf -i
./configure --prefix=/opt/libxc-4.3.4 CC=gcc CXX=g++ FC=mpif90
make -j
make -j install
echo 'export LD_LIBRARY_PATH=/opt/libxc-4.3.4//lib:$LD_LIBRARY_PATH' >> /etc/profile
echo 'export PATH=/opt/libxc-4.3.4//bin:$PATH' >> /etc/profile
=== 5. 编译安装 gsl-2.4 =======
wget http://ftp.gnu.org/gnu/gsl/gsl-2.4.tar.gz
tar xvzf gsl-2.4.tar.gz
cd gsl-2.4
[root@mgt gsl-2.4]#
mkdir build-gsl
cd build-gsl/
../configure --prefix=/opt/gsl-2.4
make -j
make -j install
echo 'export LD_LIBRARY_PATH=/opt/gsl-2.4/lib:$LD_LIBRARY_PATH' >> /etc/profile
echo 'export PATH=/opt/gsl-2.4/bin:$PATH' >> /etc/profile
==== 6. 编译安装 fftw-3.3.8 ==========
wget http://fftw.org/fftw-3.3.8.tar.gz
tar xzvf fftw-3.3.8.tar.gz
cd fftw-3.3.8/
ls
less README
./configure --prefix=/opt/fftw-3.3.8
make -j
make install
ls /opt/fftw-3.3.8/
echo 'export LD_LIBRARY_PATH=/opt/fftw-3.3.8//lib:$LD_LIBRARY_PATH' >> /etc/profile
echo 'export PATH=/opt/fftw-3.3.8//bin:$PATH' >> /etc/profile
======== FINAL: 编译安装 Octopus 9.1 =============
wget https://octopus-code.org/download/9.1/octopus-9.1.tar.gz
tar xzf octopus-9.1.tar.gz
cd octopus-9.1/
ls
./configure --prefix=/opt/octopus-9.1 --with-libxc-prefix=/opt/libxc-4.3.4/ --with-gsl-prefix=/opt/gsl-2.4/ --with-blas=/opt/BLAS-3.8.0/libblas.a --with-lapack="-L/opt/lapack-3.9.0 -ltmglib -llapack" --with-scalapack="-L/opt/scalapack-2.1.0 -lscalapack" --with-fftw-prefix=/opt/fftw-3.3.8/ --enable-mpi
make -j
make install
echo 'export PATH=/opt/octopus-9.1/bin:$PATH' >> /etc/profile
# Test octopus 9.1 using a helloworld example
Comments: 4
